Publications

Book chapters:

First author publications & pre-prints:

Contributed publications & pre-prints:

  • J Zhang*, D Lee*, V Dhiman*, P Jiang*, J Xu*, P McGillivray*, H Yang*, …, Gamze Gursoy, … , M Gerstein. “An integrative ENCODE resource for cancer genomics”, Nature Communications, accepted.
  • Wang et al., … ,PsychENCODE Consortium including Gamze Gursoy, …, Gerstein. “Comprehensive functional genomic resource and integrative model for the human brain”, Science, 2018:362(6420):eaat8464
  • Gandal et al., … ,PsychENCODE Consortium including Gamze Gursoy. “Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder”, Science, 2018:362(6420):eaat8127
  • Amiri et al., … ,PsychENCODE Consortium including Gamze Gursoy, …, Vaccarino. “Transcriptome and epigenome landscape of human cortical development modeled in organoids”, Science, 2018:362(6420):eaat6720
  • Li et al., … ,PsychENCODE Consortium including Gamze Gursoy, …, Sestan. “Integrative functional genomic analysis of human brain development and neuropsychiatric risks”, Science, 2018:362(6420):eaat7615
  • Jie Liang, Youfang Cao, Gamze Gursoy, Hammad Naveed, Anna Terebus, and Jieling Zhao. “Multiscale modeling of cellular epigenetic states and tissue patterning: stochasticity in molecular network chromatin folding in cell nucleus, and cell-cell interactions in tissue patterning”, Critical Reviews in Biomedical Engineering , 2016, Accepted.
  • Sara M. Camp, Ermelinda Ceco, Carrie L. Evenoski, Sergei M. Danilov, Tong Zhou, Eddie T. Chiang, Liliana Moreno-Vinasco, Brandon Mapes, Jieling Zhao, Gamze Gursoy, Mary E. Brown, Djanybek M. Adyshev, Shahid S. Siddiqui, Hector Quijada, Saad Sammani, Eleftheria Letsiou, Laleh Saadat, Mohammed Yousef, Ting Wang, Jie Liang, and Joe G. N. Garcia. “Unique Toll-Like Receptor 4 Activation by NAMPT/PBEF Induces NF?B Signaling and Inflammatory Lung Injury”, Scientific Reports, 2015, 14(5), 13135
  • Reka Albert, Bhaskar DasGupta, Rashmi Hedge, Gowri Sangeetha Sivanathan, Anthony Gitter, Gamze Gursoy, Pradyut Paul, Eduardo Sontag. “Computationally efficient measure of topological redundancy of biological and social networks”, Physical Review E, 2011, 84, 036117
  • Georgi Z. Genchev, Morten Kallberg, Gamze Gursoy, Anuradha Mittal, Lalit Dubey, Ognjen Perisic, Gang Feng, and Hui Lu. “Mechanical signaling on the single protein level studies using steered molecular dynamics”, Cell Biochemistry and Biophysics, 2009, 55:141-152, (2009)
  • Mariam N. Ismail, Naftali D. Fraiman, Dennis M. Callahan Jr., Gamze Gursoy, Edward Viveiros, Onnaz Ozkanat, Zhaoxia Ji, Ronald J. Willey, Juliusz Warzywoda and Albert Sacco Jr. “First unseeded hydrothermal synthesis of microporous vanadosilicate AM-6”, Microporous and Mesoporous Materials, 2009, 120: 454-459